/** Called automatically by JsDoc Toolkit. */

function publish(symbolSet) {

	publish.conf = {  // trailing slash expected for dirs

		ext:         ".html",

		outDir:      JSDOC.opt.d || SYS.pwd+"../out/jsdoc/",

		templatesDir: JSDOC.opt.t || SYS.pwd+"../templates/jsdoc/",

		symbolsDir:  "symbols/",

		srcDir:      "symbols/src/"

	};

	// is source output is suppressed, just display the links to the source file

	if (JSDOC.opt.s && defined(Link) && Link.prototype._makeSrcLink) {

		Link.prototype._makeSrcLink = function(srcFilePath) {

			return "<"+srcFilePath+">";

		}

	}

	// create the folders and subfolders to hold the output

	IO.mkPath((publish.conf.outDir+"symbols/src").split("/"));

	// used to allow Link to check the details of things being linked to

	Link.symbolSet = symbolSet;

	// create the required templates

	try {

		var classTemplate = new JSDOC.JsPlate(publish.conf.templatesDir+"class.tmpl");

		var classesTemplate = new JSDOC.JsPlate(publish.conf.templatesDir+"allclasses.tmpl");

	}

	catch(e) {

		print("Couldn't create the required templates: "+e);

		quit();

	}

	// some ustility filters

	function hasNoParent($) {return ($.memberOf == "")}

	function isaFile($) {return ($.is("FILE"))}

	function isaClass($) {return ($.is("CONSTRUCTOR") || $.isNamespace)}

	// get an array version of the symbolset, useful for filtering

	var symbols = symbolSet.toArray();

	// create the hilited source code files

	var files = JSDOC.opt.srcFiles;

 	for (var i = 0, l = files.length; i < l; i++) {

 		var file = files[i];

 		var srcDir = publish.conf.outDir + "symbols/src/";

		makeSrcFile(file, srcDir);

 	}

 	// get a list of all the classes in the symbolset

 	var classes = symbols.filter(isaClass).sort(makeSortby("alias"));

	// create a filemap in which outfiles must be to be named uniquely, ignoring case

	if (JSDOC.opt.u) {

		var filemapCounts = {};

		Link.filemap = {};

		for (var i = 0, l = classes.length; i < l; i++) {

			var lcAlias = classes[i].alias.toLowerCase();

			if (!filemapCounts[lcAlias]) filemapCounts[lcAlias] = 1;

			else filemapCounts[lcAlias]++;

			Link.filemap[classes[i].alias] = 

				(filemapCounts[lcAlias] > 1)?

				lcAlias+"_"+filemapCounts[lcAlias] : lcAlias;

		}

	}

	// create a class index, displayed in the left-hand column of every class page

	Link.base = "../";

 	publish.classesIndex = classesTemplate.process(classes); // kept in memory

	// create each of the class pages

	for (var i = 0, l = classes.length; i < l; i++) {

		var symbol = classes[i];

		symbol.events = symbol.getEvents();   // 1 order matters

		symbol.methods = symbol.getMethods(); // 2

		Link.currentSymbol= symbol;

		var output = "";

		output = classTemplate.process(symbol);

		IO.saveFile(publish.conf.outDir+"symbols/", ((JSDOC.opt.u)? Link.filemap[symbol.alias] : symbol.alias) + publish.conf.ext, output);

	}

	// regenerate the index with different relative links, used in the index pages

	Link.base = "";

	publish.classesIndex = classesTemplate.process(classes);

	// create the class index page

	try {

		var classesindexTemplate = new JSDOC.JsPlate(publish.conf.templatesDir+"index.tmpl");

	}

	catch(e) { print(e.message); quit(); }

	var classesIndex = classesindexTemplate.process(classes);

	IO.saveFile(publish.conf.outDir, "index"+publish.conf.ext, classesIndex);

	classesindexTemplate = classesIndex = classes = null;

	// create the file index page

	try {

		var fileindexTemplate = new JSDOC.JsPlate(publish.conf.templatesDir+"allfiles.tmpl");

	}

	catch(e) { print(e.message); quit(); }

	var documentedFiles = symbols.filter(isaFile); // files that have file-level docs

	var allFiles = []; // not all files have file-level docs, but we need to list every one

	for (var i = 0; i < files.length; i++) {

		allFiles.push(new JSDOC.Symbol(files[i], [], "FILE", new JSDOC.DocComment("/** */")));

	}

	for (var i = 0; i < documentedFiles.length; i++) {

		var offset = files.indexOf(documentedFiles[i].alias);

		allFiles[offset] = documentedFiles[i];

	}

	allFiles = allFiles.sort(makeSortby("name"));

	// output the file index page

	var filesIndex = fileindexTemplate.process(allFiles);

	IO.saveFile(publish.conf.outDir, "files"+publish.conf.ext, filesIndex);

	fileindexTemplate = filesIndex = files = null;

}

/** Just the first sentence (up to a full stop). Should not break on dotted variable names. */

function summarize(desc) {

	if (typeof desc != "undefined")

		return desc.match(/([\w\W]+?\.)[^a-z0-9_$]/i)? RegExp.$1 : desc;

}

/** Make a symbol sorter by some attribute. */

function makeSortby(attribute) {

	return function(a, b) {

		if (a[attribute] != undefined && b[attribute] != undefined) {

			a = a[attribute].toLowerCase();

			b = b[attribute].toLowerCase();

			if (a < b) return -1;

			if (a > b) return 1;

			return 0;

		}

	}

}

/** Pull in the contents of an external file at the given path. */

function include(path) {

	var path = publish.conf.templatesDir+path;

	return IO.readFile(path);

}

/** Turn a raw source file into a code-hilited page in the docs. */

function makeSrcFile(path, srcDir, name) {

	if (JSDOC.opt.s) return;

	if (!name) {

		name = path.replace(/\.\.?[\\\/]/g, "").replace(/[\\\/]/g, "_");

		name = name.replace(/\:/g, "_");

	}

	var src = {path: path, name:name, charset: IO.encoding, hilited: ""};

	if (defined(JSDOC.PluginManager)) {

		JSDOC.PluginManager.run("onPublishSrc", src);

	}

	if (src.hilited) {

		IO.saveFile(srcDir, name+publish.conf.ext, src.hilited);

	}

}

/** Build output for displaying function parameters. */

function makeSignature(params) {

	if (!params) return "()";

	var signature = "("

	+

	params.filter(

		function($) {

			return $.name.indexOf(".") == -1; // don't show config params in signature

		}

	).map(

		function($) {

			return $.name;

		}

	).join(", ")

	+

	")";

	return signature;

}

/** Find symbol {@link ...} strings in text and turn into html links */

function resolveLinks(str, from) {

	str = str.replace(/\{@link ([^} ]+) ?\}/gi,

		function(match, symbolName) {

			return new Link().toSymbol(symbolName);

		}

	);

	return str;

}