--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/.env.tmpl	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,5 @@
+DEBUG=True
+SECRET_KEY=
+GITHUB_CLIENT_ID=
+GITHUB_CLIENT_SECRET=
+BROKER_PASSWORD=

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/.envrc	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,3 @@
+dotenv_if_exists
+
+export REGISTRY_PASSWORD=mVHtqMkOFCVPWWaJjZx37PGb9h21FHkk

--- a/.hgignore	Wed Jan 29 16:56:04 2020 +0100
+++ b/.hgignore	Wed Aug 14 22:08:14 2024 +0200
@@ -10,3 +10,6 @@
 src/catedit.egg-info
 catedit.egg-info
 sbin/sync/.venv
+.env
+.envrc
+.etchosts

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/build.sh	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,13 @@
+#!/usr/bin/env bash
+
+SCRIPTPATH="$( cd -- "$(dirname "$0")" >/dev/null 2>&1 ; pwd -P )"
+
+pushd $SCRIPTPATH
+
+podman login -u iri -p "${REGISTRY_PASSWORD}" reg.kevin.srv.iri-research.org
+
+podman build -f docker/server.dockerfile -t reg.kevin.srv.iri-research.org/iri/catedit_server:latest .
+
+podman push reg.kevin.srv.iri-research.org/iri/catedit_server:latest
+
+popd

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/compose.yml	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,65 @@
+services:
+
+  server:
+    image: catedit_server
+    build:
+      context: .
+      dockerfile: docker/server.dockerfile
+    depends_on:
+      broker: service_started
+      memcached: service_started
+    environment:
+      BROKER_URL: amqp://iri:${BROKER_PASSWORD}@broker:5672/catedit
+      RESULT_BROKER_URL: rpc://iri:${BROKER_PASSWORD}@broker:5672/catedit
+      MEMCACHED_URL: memcached:11211
+      DEBUG: ${DEBUG}
+      SECRET_KEY: ${SECRET_KEY}
+      GITHUB_CLIENT_ID : ${GITHUB_CLIENT_ID}
+      GITHUB_CLIENT_SECRET : ${GITHUB_CLIENT_SECRET}
+
+  
+  broker:
+    image: rabbitmq:3-alpine
+    hostname: catedit_rabbitmq
+    environment: 
+      RABBITMQ_DEFAULT_USER: iri
+      RABBITMQ_DEFAULT_PASS: ${BROKER_PASSWORD}
+      RABBITMQ_DEFAULT_VHOST: catedit
+
+  worker:
+    image: catedit_server
+    depends_on:
+      broker: service_started
+      memcached: service_started
+    command:
+      - celery
+      - -A
+      - catedit.celery
+      - worker
+      - -c
+      - "1"
+      - -l
+      - info
+      - -Q
+      - repo_catedit-dev-testing,repo_mons-categories-prototype,repo_habitabilite-prototype,repo_collaboration-prototype,repo_economie-de-la-contribution,repo_habitabilite-chercheur,repo_explorunivers-habitabilite,repo_catedit-testing
+    environment:
+      BROKER_URL: amqp://iri:${BROKER_PASSWORD}@broker:5672/catedit
+      RESULT_BROKER_URL: rpc://iri:${BROKER_PASSWORD}@broker:5672/catedit
+      MEMCACHED_URL: memcached:11211
+      DEBUG: ${DEBUG}
+      SECRET_KEY: ${SECRET_KEY}
+      GITHUB_CLIENT_ID : ${GITHUB_CLIENT_ID}
+      GITHUB_CLIENT_SECRET: ${GITHUB_CLIENT_SECRET}
+      CATEDIT_SETTINGS: /code/config.py
+      BASE_URL: "http://server:8000"
+
+
+  memcached:
+    image: docker.io/memcached
+
+  web:
+    build:
+      context: docker
+      dockerfile: web.dockerfile
+    ports:
+      - "443:443"
\ No newline at end of file

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/docker/Caddyfile	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,7 @@
+catedit.iri-research.org {
+    tls internal
+    
+    handle /* {
+        reverse_proxy server:8000
+    }
+}
\ No newline at end of file

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/docker/catedit.yml	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,11 @@
+uwsgi:
+  master: 1
+  http-socket: :8000
+  virtualenv: /code/.venv
+  processes: 1
+  buffer-size: 65535
+  log-master: true
+  die-on-term: true
+  chdir: /code/
+  module: catedit:app
+  env: CATEDIT_SETTINGS=/code/config.py

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/docker/config.py	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,89 @@
+from rdflib import URIRef, RDF, RDFS, Literal
+from rdflib.namespace import SKOS
+from kombu import Queue
+from environs import Env
+
+env = Env()
+env.read_env()  # read .env file, if it exists
+# Debug and running settings
+
+HOST = "0.0.0.0"
+DEBUG = env.bool("DEBUG", True)
+
+SERVER_NAME = "catedit.iri-research.org"
+BASE_URL = env.str("BASE_URL", "https://catedit.iri-research.org")
+
+# WTForms settings
+
+SECRET_KEY = env.str("SECRET_KEY")
+
+LOGGING_CONFIG = {
+    "IS_LOGGING": True,
+    "LOGGING_LEVEL": "DEBUG",
+    "LOG_FILE_PATH": "-",
+}
+
+CACHE_CONFIG = {
+    "CACHE_TYPE": "memcached",
+    "CACHE_KEY_PREFIX": "ctdt",
+    "CACHE_MEMCACHED_SERVERS" : (env.str('MEMCACHED_URL'),),
+}
+
+# Github repository config
+PERSISTENCE_CONFIG = {
+    "METHOD" : "PersistenceToGithub",
+    "REPOSITORY_LIST" : [
+        "catedit-dev-testing",
+        "mons-categories-prototype",
+        "habitabilite-prototype",
+        "collaboration-prototype",
+        "economie-de-la-contribution",
+        "habitabilite-chercheur",
+        "explorunivers-habitabilite",
+        "catedit-testing",
+    ],
+    "REPOSITORY_OWNER" : "catedit-system",
+    "CATEGORIES_PATH" : "categories/",
+    "GITHUB_CLIENT_ID" : env.str("GITHUB_CLIENT_ID"),
+    "GITHUB_CLIENT_SECRET" : env.str("GITHUB_CLIENT_SECRET")
+}
+
+# Property List
+PROPERTY_LIST = {
+    RDFS.subClassOf.toPython(): {
+        "descriptive_label_fr": "Sous-classe de",
+        "descriptive_label_en": "Subclass of",
+        "object_type": "uriref-category",
+        "usable_in_editor": True,
+        "rdflib_class": RDFS.subClassOf,
+    },
+    RDFS.comment.toPython(): {
+        "descriptive_label_fr": "Commentaire",
+        "descriptive_label_en": "Comment",
+        "object_type": "literal",
+        "usable_in_editor": True,
+        "rdflib_class": RDFS.comment,
+    },
+    RDFS.Resource.toPython(): {
+        "descriptive_label_fr": "Ressource",
+        "descriptive_label_en": "Resource",
+        "object_type": "uriref-link",
+        "usable_in_editor": True,
+        "rdflib_class": RDFS.Resource,
+    },
+    SKOS.related.toPython(): {
+        "descriptive_label_fr": "En relation avec",
+        "descriptive_label_en": "Related to",
+        "object_type": "uriref-category",
+        "usable_in_editor": True,
+        "rdflib_class": SKOS.related,
+    }
+}
+
+
+CELERY_BROKER_URL = env.str('BROKER_URL')
+CELERY_RESULT_BACKEND = env.str('RESULT_BROKER_URL')
+if PERSISTENCE_CONFIG["METHOD"] == "PersistenceToGithub":
+    CELERY_QUEUES = tuple(
+        Queue("repo_"+repository, routing_key="task_for_"+repository) for repository in PERSISTENCE_CONFIG["REPOSITORY_LIST"]
+    )

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/docker/entrypoint.sh	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,5 @@
+#!/usr/bin/env bash
+
+set -Eeuo pipefail
+
+exec "$@"
\ No newline at end of file

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/docker/requirements.txt	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,22 @@
+amqp
+celery
+Flask
+Flask-Cache
+Flask-Moment
+Flask-RESTful
+Flask-WTF
+GitHub-Flask
+Jinja2
+kombu
+pep8
+pylint
+python-slugify
+pytz
+rdflib
+requests
+six
+Unidecode
+Werkzeug
+WTForms
+uWSGI
+pylibmc

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/docker/server.dockerfile	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,42 @@
+# set base image (host OS)
+FROM docker.io/python:alpine as base
+
+ARG DEV=false
+ENV PATH="/code/.venv/bin:$PATH"
+WORKDIR /code
+
+FROM base as builder
+
+ENV POETRY_NO_INTERACTION=1 \
+    POETRY_VIRTUALENVS_IN_PROJECT=1 \
+    POETRY_VIRTUALENVS_CREATE=1 \
+    POETRY_CACHE_DIR=/tmp/poetry_cache
+
+RUN \
+  apk add --no-cache libmemcached zlib && \
+  apk add --no-cache musl-dev build-base libmemcached-dev zlib-dev linux-headers
+
+
+# Install Poetry
+RUN pip install poetry
+
+# Install the app
+COPY src/pyproject.toml src/poetry.lock ./
+RUN if [ $DEV ]; then \
+      poetry install --with dev --no-root && rm -rf $POETRY_CACHE_DIR; \
+    else \
+      poetry install --without dev --no-root && rm -rf $POETRY_CACHE_DIR; \
+    fi
+
+FROM base as runtime
+
+RUN apk add --no-cache libmemcached zlib bash
+
+COPY --from=builder /code/.venv /code/.venv
+COPY src/catedit /code/catedit
+COPY docker/catedit.yml /code/
+COPY docker/config.py /code/
+ENV CATEDIT_SETTINGS=/code/config.py
+  
+
+CMD ["uwsgi", "--yaml", "/code/catedit.yml"]
\ No newline at end of file

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/docker/web.dockerfile	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,10 @@
+FROM docker.io/caddy:builder AS builder
+
+RUN xcaddy build \
+    --with github.com/BadAimWeeb/caddy-uwsgi-transport
+
+FROM docker.io/caddy:latest
+
+COPY --from=builder /usr/bin/caddy /usr/bin/caddy
+COPY Caddyfile /etc/caddy/Caddyfile
+

--- a/src/catedit/__init__.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/__init__.py	Wed Aug 14 22:08:14 2024 +0200
@@ -3,19 +3,30 @@
 module main file used to configure the Flask app
 """
 
-from logging import FileHandler, Formatter
 import os
 import re
+import sys
+import logging
+from logging import FileHandler, Formatter, StreamHandler
+
+import werkzeug
+from requests import request
+from werkzeug.utils import import_string
+
 from catedit.version import CURRENT_VERSION
-from requests import request
 
-from flask import has_request_context, Flask, session, request, url_for, g
-from flask_wtf.csrf import CsrfProtect
-from flask.ext.github import GitHub
-from flask.ext.cache import Cache
-from flask.ext.restful import Api
-from flask.ext.moment import Moment
+werkzeug.import_string = import_string
+
+from urllib.request import HTTPHandler, OpenerDirector, Request, install_opener
+
 from celery import Celery
+from flask import Flask, g, has_request_context, request, session, url_for
+from flask_caching import Cache
+from flask_github import GitHub
+from flask_moment import Moment
+from flask_restful import Api
+from flask_wtf.csrf import CSRFProtect
+
 
 from catedit.settings import AppSettings
 
@@ -37,10 +48,49 @@
 if not app_configured:
     raise Exception("Catedit not configured")
 
+# Set up logging
+if app.config["LOGGING_CONFIG"]["IS_LOGGING"]:
+    
+    logfilepath = app.config["LOGGING_CONFIG"]["LOG_FILE_PATH"]
+    handler = StreamHandler(sys.stdout)
+    if logfilepath and logfilepath != "-":
+        handler = FileHandler(filename=logfilepath)
+        
+    handler.setFormatter(Formatter(
+        '%(asctime)s %(levelname)s: %(message)s '
+        '[in %(pathname)s:%(lineno)d]',
+        '%Y-%m-%d %H:%M:%S'
+    ))
+    app.logger.addHandler(handler)
+    app.logger.setLevel(app.config["LOGGING_CONFIG"]["LOGGING_LEVEL"])
+
+logger = logging.getLogger(__name__);
+
+# class SecuredHTTPHandler(HTTPHandler):
+#     """
+#     """
+#     def http_open(self, req: Request):
+#         """
+#         Block access to some URLs".
+
+#         :param req: The request to open.
+#         :return: The response.
+#         :raises PermissionError: If the URL ends with "blocked.jsonld".
+#         """
+#         logger.error("OPENED URL : " + req.get_full_url())
+#         if req.get_full_url().startswith("http://www.w3.org/1999/02/22-rdf-syntax-ns"):
+#             raise PermissionError("Permission denied for URL")
+#         return super().http_open(req)
+
+# opener = OpenerDirector()
+# opener.add_handler(SecuredHTTPHandler())
+# install_opener(opener)
+
+
 cache = Cache(app, config=app.config["CACHE_CONFIG"])
 
 # CSRF protection
-csrf = CsrfProtect(app)
+csrf = CSRFProtect(app)
 
 # Github
 app.config["GITHUB_CLIENT_ID"] = app.config["PERSISTENCE_CONFIG"].get(
@@ -104,7 +154,7 @@
             item["url"] = resource
         if session["pagination_links"].get("next", None) is not None:
             page_arg = re.search(
-                "(\?|&)page=(\d+)",
+                "(\\?|&)page=(\\d+)",
                 string=session["pagination_links"]["next"]["url"]
             )
             session["pagination_links"]["current_page"] = int(
@@ -112,7 +162,7 @@
             )-1
             if session["pagination_links"].get("last", None) is not None:
                 last_page_arg = re.search(
-                    "(\?|&)page=(\d+)",
+                    "(\\?|&)page=(\\d+)",
                     string=session["pagination_links"]["last"]["url"]
                 )
                 session["pagination_links"]["last_page"] = int(
@@ -126,7 +176,7 @@
         elif session["pagination_links"].get("prev", None) is not None:
             # This means we're at the last page
             page_arg = re.search(
-                "(\?|&)page=(\d+)",
+                "(\\?|&)page=(\\d+)",
                 string=session["pagination_links"]["prev"]["url"]
             )
             session["pagination_links"]["current_page"] = int(
@@ -139,6 +189,14 @@
             session["pagination_links"]["last_page"] = 1
     else:
         session.pop("pagination_links", None)
+        
+@app.before_request
+def make_session_permanent():
+    """_summary_
+    Make session permanent
+    """
+    session.permanent = True
+
 
 # Api
 api = Api(app)
@@ -146,9 +204,10 @@
 # Version
 app.config["CURRENT_VERSION"] = CURRENT_VERSION
 
+from catedit.resources import CategoryAPI, CategoryChangesAPI
 # Views and APIs
-from catedit.views import home, categories, social, meta
-from catedit.resources import CategoryAPI, CategoryChangesAPI
+from catedit.views import categories, home, meta, social
+
 app.register_blueprint(home.module)
 app.register_blueprint(categories.module, url_prefix='/cat')
 app.register_blueprint(social.module, url_prefix='/social')
@@ -182,18 +241,7 @@
     return url_for(request.endpoint, **args)
 app.jinja_env.globals['url_for_other_per_page'] = url_for_other_per_page
 
-# Set up logging
-if app.config["LOGGING_CONFIG"]["IS_LOGGING"]:
-    file_handler = FileHandler(filename=app.config["LOGGING_CONFIG"]
-                                                  ["LOG_FILE_PATH"])
-    file_handler.setFormatter(Formatter(
-        '%(asctime)s %(levelname)s: %(message)s '
-        '[in %(pathname)s:%(lineno)d]',
-        '%Y-%m-%d %H:%M:%S'
-    ))
-    app.logger.addHandler(file_handler)
-    app.logger.setLevel(app.config["LOGGING_CONFIG"]["LOGGING_LEVEL"])
 
 # Session management
+app.secret_key = app.config["SECRET_KEY"]
 
-app.secret_key = app.config["SECRET_KEY"]

--- a/src/catedit/models.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/models.py	Wed Aug 14 22:08:14 2024 +0200
@@ -10,7 +10,7 @@
 import logging
 from uuid import uuid4
 
-from rdflib import Graph, RDF, RDFS, Literal
+from rdflib import Graph, RDF, RDFS, Literal, URIRef
 from rdflib.compare import to_isomorphic, graph_diff
 from slugify import slugify
 
@@ -41,7 +41,7 @@
             cat_id = slugify(label)+"_"+str(uuid4())[:8]
             self.cat_graph = Graph()
             self.this_category = app.config["CATEGORY_NAMESPACE"][cat_id]
-            self.cat_graph.add((self.this_category, RDF.ID, Literal(cat_id)))
+            self.cat_graph.add((self.this_category, URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#ID"), Literal(cat_id)))
 
             if label:
                 self.cat_graph.add(
@@ -49,7 +49,7 @@
                 )
             if description:
                 self.cat_graph.add(
-                    (self.this_category, RDF.Description, Literal(description))
+                    (self.this_category, URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Description"), Literal(description))
                 )
 
             if other_properties:
@@ -59,7 +59,7 @@
         else:
             self.cat_graph = graph
             # Warning: not foolproof, if loading a Graph with multiple IDs (should not happen)
-            self.this_category = next(self.cat_graph.subjects(predicate=RDF.ID))
+            self.this_category = next(self.cat_graph.subjects(predicate=URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#ID")))
 
     @property
     def label(self):
@@ -78,7 +78,7 @@
             Returns category description
         """
         return_value = \
-            self.cat_graph.value(self.this_category, RDF.Description)
+            self.cat_graph.value(self.this_category, URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Description"))
         if return_value is None:
             return None
         else:
@@ -89,7 +89,7 @@
         """
             Returns category id
         """
-        return self.cat_graph.value(self.this_category, RDF.ID).toPython()
+        return self.cat_graph.value(self.this_category, URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#ID")).toPython()
 
     @property
     def properties(self):
@@ -99,9 +99,9 @@
         return [
             predicate_object_tuple for predicate_object_tuple in self.cat_graph.predicate_objects()
             if (
-                predicate_object_tuple[0]!=RDF.ID and
+                predicate_object_tuple[0]!=URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#ID") and
                 predicate_object_tuple[0]!=RDFS.label and
-                predicate_object_tuple[0]!=RDF.Description
+                predicate_object_tuple[0]!=URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Description")
             )
         ]
 
@@ -122,7 +122,7 @@
            (new_label != self.label):
             self.cat_graph.remove((self.this_category,
                                    RDFS.label,
-                                   self.cat_graph.label(self.this_category)))
+                                   self.label))
             self.cat_graph.add((self.this_category,
                                 RDFS.label,
                                 Literal(new_label)))
@@ -130,17 +130,17 @@
         if (new_description != "") and \
            (new_description != self.description):
             self.cat_graph.remove((self.this_category,
-                                  RDF.Description,
+                                  URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Description"),
                                   self.cat_graph.value(self.this_category,
-                                                       RDF.Description)))
+                                                       URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Description"))))
             self.cat_graph.add((self.this_category,
-                               RDF.Description,
+                               URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Description"),
                                Literal(new_description)))
 
         if new_other_properties is not None and \
            (new_other_properties != self.properties):
             for (predicate, object) in self.cat_graph.predicate_objects():
-                if predicate not in [RDF.ID, RDF.Description, RDFS.label]:
+                if predicate not in [URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#ID"), URIRef("http://www.w3.org/1999/02/22-rdf-syntax-ns#Description"), RDFS.label]:
                     self.cat_graph.remove(
                         (self.this_category, predicate, None)
                     )

--- a/src/catedit/persistence.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/persistence.py	Wed Aug 14 22:08:14 2024 +0200
@@ -11,9 +11,8 @@
 from abc import ABCMeta, abstractmethod
 from catedit import github, app, log_api_rate
 from base64 import b64decode
-from flask.ext.github import GitHubError
+from flask_github import GitHubError
 import os
-import json
 
 logger = app.logger
 
@@ -210,7 +209,6 @@
             original file list, then it's a new file and we append it to the
             tree
         """
-
         deletion_dict = kwargs["deletion_dict"]
         modification_dict = kwargs["modification_dict"]
 
@@ -421,7 +419,7 @@
             logger.error(ghe.response.text)
 
         # Point 6
-        new_head_data = {"sha": new_commit[0]["sha"], "force": "true"}
+        new_head_data = {"sha": new_commit[0]["sha"], "force": True}
         #TODO: vérifier encoding - logger.debug(str(new_head_data))
         try:
             new_head = github.patch(
@@ -429,7 +427,7 @@
                 + app.config["PERSISTENCE_CONFIG"]["REPOSITORY_OWNER"] + "/"
                 + self.repository
                 + "/git/refs/heads/master",
-                data=json.dumps(new_head_data),
+                data=new_head_data,
                 hooks=dict(response=log_api_rate)
             )
             #TODO: vérifier encoding - logger.debug(str(new_head))

--- a/src/catedit/resources.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/resources.py	Wed Aug 14 22:08:14 2024 +0200
@@ -16,7 +16,7 @@
 from flask import session
 from rdflib import Graph, URIRef, Literal
 
-from flask.ext.restful import Resource, reqparse
+from flask_restful import Resource, reqparse
 
 
 logger = app.logger
@@ -56,14 +56,14 @@
                 if cat is not None:
                     rv = cat.cat_graph.serialize(
                         format='turtle'
-                    ).decode("utf-8"), 200
+                    ), 200
                 else:
                     rv = 404
             else:
                 response = []
                 for cat in cat_manager_instance.list_categories():
                     response.append(
-                        cat.cat_graph.serialize(format='turtle').decode("utf-8")
+                        cat.cat_graph.serialize(format='turtle')
                     )
                 rv = response, 200
             # Cache operations
@@ -157,10 +157,9 @@
             cat.edit_category(new_description=cat_data["description"],
                               new_label=cat_data["label"],
                               new_other_properties=new_property_list)
+            
 
-            session.setdefault("modified_categories", {}).setdefault(repository, {})[cat.cat_id] = str(
-                cat.cat_graph.serialize(format="turtle"), "utf-8"
-            )
+            session.setdefault("modified_categories", {}).setdefault(repository, {})[cat.cat_id] = cat.cat_graph.serialize(format="turtle")
 
             # Now we must clean the deleted categories list in case the
             # modified category was deleted before being edited
@@ -207,15 +206,11 @@
             other_properties=property_list
         )
 
-
-
         if cat.cat_id not in session.setdefault("modified_categories", {}).setdefault(repository, {}):
-            session.setdefault("modified_categories", {}).setdefault(repository, {})[cat.cat_id] = str(
-                cat.cat_graph.serialize(format="turtle"), "utf-8"
-            )
+            session.setdefault("modified_categories", {}).setdefault(repository, {})[cat.cat_id] = cat.cat_graph.serialize(format="turtle")
 
         return cat.cat_id, \
-               cat.cat_graph.serialize(format='turtle').decode("utf-8"), \
+               cat.cat_graph.serialize(format='turtle'), \
                201
 
     def delete(self, repository, deleted_cat_id):
@@ -288,11 +283,7 @@
                             )
                             session["modified_categories"] \
                                    [repository] \
-                                   [modified_cat.cat_id] = str(
-                                modified_cat.cat_graph
-                                            .serialize(format="turtle"),
-                                "utf-8"
-                            )
+                                   [modified_cat.cat_id] = modified_cat.cat_graph.serialize(format="turtle")
 
                 # now we check if an unmodified category reference the deleted
                 # category
@@ -317,10 +308,7 @@
                             cat.edit_category(
                                 new_other_properties=new_property_list
                             )
-                            session.setdefault("modified_categories", {}).setdefault(repository, {})[cat.cat_id] = str(
-                                cat.cat_graph.serialize(format="turtle"),
-                                "utf-8"
-                            )
+                            session.setdefault("modified_categories", {}).setdefault(repository, {})[cat.cat_id] = cat.cat_graph.serialize(format="turtle")
 
         return 204
 

--- a/src/catedit/settings.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/settings.py	Wed Aug 14 22:08:14 2024 +0200
@@ -20,3 +20,4 @@
     CELERY_RESULT_SERIALIZER = 'json'
     CELERY_ACCEPT_CONTENT = ['json', 'msgpack', 'yaml']
     CELERY_DISABLE_RATE_LIMITS = True
+    SESSION_PROTECTION = "strong"

--- a/src/catedit/tasks.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/tasks.py	Wed Aug 14 22:08:14 2024 +0200
@@ -27,7 +27,7 @@
                 message=message
             )
             registry_key = "categories_"+repository+"_keys"
-            r = requests.post(app.config['BASE_URL']+"/meta/cache-clear/"+registry_key)
+            r = requests.post(app.config['BASE_URL']+"/meta/cache-clear/"+registry_key, verify=False, headers={ "HOST": app.config['SERVER_NAME'] })
             #r = requests.post(app.config['BASE_URL']+"/meta/cache-clear")
             try:
                 r.raise_for_status()

--- a/src/catedit/templates/categories/editor.html	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/templates/categories/editor.html	Wed Aug 14 22:08:14 2024 +0200
@@ -48,7 +48,7 @@
   <h3>{% if cat_id: %} Edition : <small>Catégorie existante</small>{% else %}Création : <small>Nouvelle catégorie</small>{% endif %}</h3>
   {% if readonly %} <fieldset disabled> {% endif %}
   <form method="POST" action="{% if cat_id %}{{ url_for('categories.editor', cat_id=cat_id, repository=current_repository) }}{% else %}{{ url_for('categories.editor', repository=current_repository) }}{% endif %}" id="cat_form" role="form">
-    {{ form.hidden_tag() }}
+    {% if form.hidden_tag %}{{ form.hidden_tag() }}{% endif %}
     {% if form.label.errors %}
       {% set label_placeholder="Champ obligatoire" %}
     {% endif %}

--- a/src/catedit/templates/categories/submit.html	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/templates/categories/submit.html	Wed Aug 14 22:08:14 2024 +0200
@@ -48,7 +48,7 @@
   <div class="col-md-12">
     <form method="POST" action="{{ url_for('categories.push_changes', repository=current_repository)}}">
       <fieldset {% if readonly %}disabled{% endif %}>
-        {{ commit_form.hidden_tag() }}
+        {% if commit_form.hidden_tag %}{{ commit_form.hidden_tag() }}{%endif %}
         <div class="form-group">
           {{ commit_form.commit_message.label }}
           {{ commit_form.commit_message(size=40, class="form-control", readonly=readonly) }}

--- a/src/catedit/templates/social/comment_thread_layout.html	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/templates/social/comment_thread_layout.html	Wed Aug 14 22:08:14 2024 +0200
@@ -65,7 +65,7 @@
           <td>
             <form method="POST" action="{% block comment_posting_target %}{% endblock %}">
               <fieldset {% if readonly %}disabled{% endif %}>
-                {{ comment_form.hidden_tag() }}
+                {% if comment_form.hidden_tag %}{{ comment_form.hidden_tag() }}{% endif %}
                 <div class="form-group">
                   {{ comment_form.comment_field(class="form-control", readonly=readonly) }}
                 </div>

--- a/src/catedit/templates/social/discussion.html	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/templates/social/discussion.html	Wed Aug 14 22:08:14 2024 +0200
@@ -37,7 +37,7 @@
   {% endif %}
   <form method="POST" action="{{url_for('social.discussion', discussion_id='new', repository=current_repository)}}">
     <fieldset {% if readonly %}disabled{% endif %}>
-      {{ comment_form.hidden_tag() }}
+      {% if comment_form.hidden_tag %}{{ comment_form.hidden_tag() }}{% endif %}
       <div class="form-group">
         <br>
         {{ comment_form.discussion_title.label }}

--- a/src/catedit/utils.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/utils.py	Wed Aug 14 22:08:14 2024 +0200
@@ -12,7 +12,7 @@
 from rdflib.compare import to_isomorphic, graph_diff
 from rdflib.namespace import split_uri
 
-from flask.ext.github import GitHubError
+from flask_github import GitHubError
 
 
 logger = logging.getLogger(__name__)
@@ -70,7 +70,6 @@
                 (in_second, rdf_only_in_second)
         ]:
             for triple in diff_list.triples((None, None, None)):
-                logger.debug(triple)
                 if triple[1] == RDFS.label:
                     final_list.append(("label", triple[2].toPython()))
                 elif triple[1] == RDF.Description:

--- a/src/catedit/views/categories.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/views/categories.py	Wed Aug 14 22:08:14 2024 +0200
@@ -12,7 +12,7 @@
 from catedit.utils import get_property_list
 from io import StringIO
 
-from flask import render_template, request, redirect, url_for, abort, Blueprint
+from flask import render_template, request, redirect, url_for, abort, Blueprint, session
 from rdflib import Graph
 from rdflib.namespace import split_uri
 
@@ -64,7 +64,6 @@
     check_user_status_and_repo_access(repository)
     
     cat_changes_api_instance = CategoryChangesAPI()
-    logger.debug("deleting changes for cat")
     cat_changes_api_instance.delete(
         repository=repository,
         modified_cat_id=deleted_changes_id
@@ -233,13 +232,13 @@
             repository=repository,
             modified_cat_id=cat_id
         )
-        if changes_response[0]["type"] is "deleted":
+        if changes_response[0]["type"] == "deleted":
             abort(404)
-        elif changes_response[0]["type"] is "modified":
+        elif changes_response[0]["type"] == "modified":
             specific_serialized_cat = changes_response[0] \
                                                       ["category"] \
                                                       [cat_id]
-        elif changes_response[0]["type"] is "untouched":
+        elif changes_response[0]["type"] == "untouched":
             category_api_response = cat_api_instance.get(
                 repository=repository,
                 cat_id=cat_id

--- a/src/catedit/views/forms.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/views/forms.py	Wed Aug 14 22:08:14 2024 +0200
@@ -2,13 +2,13 @@
 forms.py
 Module that groups custom forms used in CatEdit
 """
-from flask_wtf import Form
+from flask_wtf import FlaskForm
 from wtforms import StringField, TextAreaField, FormField, \
                     FieldList, HiddenField
 from wtforms.validators import DataRequired, Optional
 
 
-class CommitForm(Form):
+class CommitForm(FlaskForm):
     """
         Custom form class for commiting changes
     """
@@ -18,7 +18,7 @@
     )
 
 
-class PropertyForm(Form):
+class PropertyForm(FlaskForm):
     """
         Form of a given property, each one is a couple of hidden fields that
         can be Javascript-generated in the template
@@ -29,7 +29,7 @@
     )
 
 
-class CategoryForm(Form):
+class CategoryForm(FlaskForm):
     """
         Custom form class for creating a category with the absolute minimal
         attributes (label and description)
@@ -45,7 +45,7 @@
     properties = FieldList(FormField(PropertyForm), validators=[Optional()])
 
 
-class CommentForm(Form):
+class CommentForm(FlaskForm):
     """
         Custom form class for commiting changes
     """
@@ -54,7 +54,7 @@
         validators=[DataRequired()]
     )
 
-class NewDiscussionForm(Form):
+class NewDiscussionForm(FlaskForm):
     """
         Custom form class for commiting changes
     """

--- a/src/catedit/views/home.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/views/home.py	Wed Aug 14 22:08:14 2024 +0200
@@ -6,7 +6,7 @@
 from catedit import app, github, log_api_rate
 from flask import render_template, redirect, url_for, \
                   session, Blueprint
-from flask.ext.github import GitHubError
+from flask_github import GitHubError
 from base64 import b64decode
 
 module = Blueprint('home', __name__)

--- a/src/catedit/views/meta.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/views/meta.py	Wed Aug 14 22:08:14 2024 +0200
@@ -23,7 +23,6 @@
     else:
         keys_set = cache.get(registry_key)
         if keys_set is not None:
-            logger.debug(keys_set)
             for key in keys_set:
                 if cache.get(key) is not None:
                     cache.delete(key)

--- a/src/catedit/views/utils.py	Wed Jan 29 16:56:04 2020 +0100
+++ b/src/catedit/views/utils.py	Wed Aug 14 22:08:14 2024 +0200
@@ -11,7 +11,7 @@
 from catedit.models import Category
 from catedit.resources import CategoryAPI, CategoryChangesAPI
 from flask import redirect, url_for, session
-from flask.ext.github import GitHubError
+from flask_github import GitHubError
 from datetime import datetime
 from rdflib import Graph
 from base64 import b64decode
@@ -276,7 +276,6 @@
     registry_key = "comments_"+repository+"_keys"
     keys_set = cache.get(registry_key)
     if keys_set is not None:
-        logger.debug(keys_set)
         for key in keys_set:
             if cache.get(key) is not None:
                 cache.delete(key)

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/src/poetry.lock	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,1017 @@
+# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand.
+
+[[package]]
+name = "amqp"
+version = "5.2.0"
+description = "Low-level AMQP client for Python (fork of amqplib)."
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "amqp-5.2.0-py3-none-any.whl", hash = "sha256:827cb12fb0baa892aad844fd95258143bce4027fdac4fccddbc43330fd281637"},
+    {file = "amqp-5.2.0.tar.gz", hash = "sha256:a1ecff425ad063ad42a486c902807d1482311481c8ad95a72694b2975e75f7fd"},
+]
+
+[package.dependencies]
+vine = ">=5.0.0,<6.0.0"
+
+[[package]]
+name = "aniso8601"
+version = "9.0.1"
+description = "A library for parsing ISO 8601 strings."
+optional = false
+python-versions = "*"
+files = [
+    {file = "aniso8601-9.0.1-py2.py3-none-any.whl", hash = "sha256:1d2b7ef82963909e93c4f24ce48d4de9e66009a21bf1c1e1c85bdd0812fe412f"},
+    {file = "aniso8601-9.0.1.tar.gz", hash = "sha256:72e3117667eedf66951bb2d93f4296a56b94b078a8a95905a052611fb3f1b973"},
+]
+
+[package.extras]
+dev = ["black", "coverage", "isort", "pre-commit", "pyenchant", "pylint"]
+
+[[package]]
+name = "astroid"
+version = "3.2.4"
+description = "An abstract syntax tree for Python with inference support."
+optional = false
+python-versions = ">=3.8.0"
+files = [
+    {file = "astroid-3.2.4-py3-none-any.whl", hash = "sha256:413658a61eeca6202a59231abb473f932038fbcbf1666587f66d482083413a25"},
+    {file = "astroid-3.2.4.tar.gz", hash = "sha256:0e14202810b30da1b735827f78f5157be2bbd4a7a59b7707ca0bfc2fb4c0063a"},
+]
+
+[[package]]
+name = "billiard"
+version = "4.2.0"
+description = "Python multiprocessing fork with improvements and bugfixes"
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "billiard-4.2.0-py3-none-any.whl", hash = "sha256:07aa978b308f334ff8282bd4a746e681b3513db5c9a514cbdd810cbbdc19714d"},
+    {file = "billiard-4.2.0.tar.gz", hash = "sha256:9a3c3184cb275aa17a732f93f65b20c525d3d9f253722d26a82194803ade5a2c"},
+]
+
+[[package]]
+name = "blinker"
+version = "1.8.2"
+description = "Fast, simple object-to-object and broadcast signaling"
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "blinker-1.8.2-py3-none-any.whl", hash = "sha256:1779309f71bf239144b9399d06ae925637cf6634cf6bd131104184531bf67c01"},
+    {file = "blinker-1.8.2.tar.gz", hash = "sha256:8f77b09d3bf7c795e969e9486f39c2c5e9c39d4ee07424be2bc594ece9642d83"},
+]
+
+[[package]]
+name = "cachelib"
+version = "0.9.0"
+description = "A collection of cache libraries in the same API interface."
+optional = false
+python-versions = ">=3.7"
+files = [
+    {file = "cachelib-0.9.0-py3-none-any.whl", hash = "sha256:811ceeb1209d2fe51cd2b62810bd1eccf70feba5c52641532498be5c675493b3"},
+    {file = "cachelib-0.9.0.tar.gz", hash = "sha256:38222cc7c1b79a23606de5c2607f4925779e37cdcea1c2ad21b8bae94b5425a5"},
+]
+
+[[package]]
+name = "celery"
+version = "5.4.0"
+description = "Distributed Task Queue."
+optional = false
+python-versions = ">=3.8"
+files = [
+    {file = "celery-5.4.0-py3-none-any.whl", hash = "sha256:369631eb580cf8c51a82721ec538684994f8277637edde2dfc0dacd73ed97f64"},
+    {file = "celery-5.4.0.tar.gz", hash = "sha256:504a19140e8d3029d5acad88330c541d4c3f64c789d85f94756762d8bca7e706"},
+]
+
+[package.dependencies]
+billiard = ">=4.2.0,<5.0"
+click = ">=8.1.2,<9.0"
+click-didyoumean = ">=0.3.0"
+click-plugins = ">=1.1.1"
+click-repl = ">=0.2.0"
+kombu = ">=5.3.4,<6.0"
+python-dateutil = ">=2.8.2"
+tzdata = ">=2022.7"
+vine = ">=5.1.0,<6.0"
+
+[package.extras]
+arangodb = ["pyArango (>=2.0.2)"]
+auth = ["cryptography (==42.0.5)"]
+azureblockblob = ["azure-storage-blob (>=12.15.0)"]
+brotli = ["brotli (>=1.0.0)", "brotlipy (>=0.7.0)"]
+cassandra = ["cassandra-driver (>=3.25.0,<4)"]
+consul = ["python-consul2 (==0.1.5)"]
+cosmosdbsql = ["pydocumentdb (==2.3.5)"]
+couchbase = ["couchbase (>=3.0.0)"]
+couchdb = ["pycouchdb (==1.14.2)"]
+django = ["Django (>=2.2.28)"]
+dynamodb = ["boto3 (>=1.26.143)"]
+elasticsearch = ["elastic-transport (<=8.13.0)", "elasticsearch (<=8.13.0)"]
+eventlet = ["eventlet (>=0.32.0)"]
+gcs = ["google-cloud-storage (>=2.10.0)"]
+gevent = ["gevent (>=1.5.0)"]
+librabbitmq = ["librabbitmq (>=2.0.0)"]
+memcache = ["pylibmc (==1.6.3)"]
+mongodb = ["pymongo[srv] (>=4.0.2)"]
+msgpack = ["msgpack (==1.0.8)"]
+pymemcache = ["python-memcached (>=1.61)"]
+pyro = ["pyro4 (==4.82)"]
+pytest = ["pytest-celery[all] (>=1.0.0)"]
+redis = ["redis (>=4.5.2,!=4.5.5,<6.0.0)"]
+s3 = ["boto3 (>=1.26.143)"]
+slmq = ["softlayer-messaging (>=1.0.3)"]
+solar = ["ephem (==4.1.5)"]
+sqlalchemy = ["sqlalchemy (>=1.4.48,<2.1)"]
+sqs = ["boto3 (>=1.26.143)", "kombu[sqs] (>=5.3.4)", "pycurl (>=7.43.0.5)", "urllib3 (>=1.26.16)"]
+tblib = ["tblib (>=1.3.0)", "tblib (>=1.5.0)"]
+yaml = ["PyYAML (>=3.10)"]
+zookeeper = ["kazoo (>=1.3.1)"]
+zstd = ["zstandard (==0.22.0)"]
+
+[[package]]
+name = "certifi"
+version = "2024.7.4"
+description = "Python package for providing Mozilla's CA Bundle."
+optional = false
+python-versions = ">=3.6"
+files = [
+    {file = "certifi-2024.7.4-py3-none-any.whl", hash = "sha256:c198e21b1289c2ab85ee4e67bb4b4ef3ead0892059901a8d5b622f24a1101e90"},
+    {file = "certifi-2024.7.4.tar.gz", hash = "sha256:5a1e7645bc0ec61a09e26c36f6106dd4cf40c6db3a1fb6352b0244e7fb057c7b"},
+]
+
+[[package]]
+name = "charset-normalizer"
+version = "3.3.2"
+description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet."
+optional = false
+python-versions = ">=3.7.0"
+files = [
+    {file = "charset-normalizer-3.3.2.tar.gz", hash = "sha256:f30c3cb33b24454a82faecaf01b19c18562b1e89558fb6c56de4d9118a032fd5"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-macosx_10_9_universal2.whl", hash = "sha256:25baf083bf6f6b341f4121c2f3c548875ee6f5339300e08be3f2b2ba1721cdd3"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-macosx_10_9_x86_64.whl", hash = "sha256:06435b539f889b1f6f4ac1758871aae42dc3a8c0e24ac9e60c2384973ad73027"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-macosx_11_0_arm64.whl", hash = "sha256:9063e24fdb1e498ab71cb7419e24622516c4a04476b17a2dab57e8baa30d6e03"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_aarch64.manylinux2014_aarch64.whl", hash = "sha256:6897af51655e3691ff853668779c7bad41579facacf5fd7253b0133308cf000d"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_ppc64le.manylinux2014_ppc64le.whl", hash = "sha256:1d3193f4a680c64b4b6a9115943538edb896edc190f0b222e73761716519268e"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_s390x.manylinux2014_s390x.whl", hash = "sha256:cd70574b12bb8a4d2aaa0094515df2463cb429d8536cfb6c7ce983246983e5a6"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-manylinux_2_17_x86_64.manylinux2014_x86_64.whl", hash = "sha256:8465322196c8b4d7ab6d1e049e4c5cb460d0394da4a27d23cc242fbf0034b6b5"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-manylinux_2_5_i686.manylinux1_i686.manylinux_2_17_i686.manylinux2014_i686.whl", hash = "sha256:a9a8e9031d613fd2009c182b69c7b2c1ef8239a0efb1df3f7c8da66d5dd3d537"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-musllinux_1_1_aarch64.whl", hash = "sha256:beb58fe5cdb101e3a055192ac291b7a21e3b7ef4f67fa1d74e331a7f2124341c"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-musllinux_1_1_i686.whl", hash = "sha256:e06ed3eb3218bc64786f7db41917d4e686cc4856944f53d5bdf83a6884432e12"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-musllinux_1_1_ppc64le.whl", hash = "sha256:2e81c7b9c8979ce92ed306c249d46894776a909505d8f5a4ba55b14206e3222f"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-musllinux_1_1_s390x.whl", hash = "sha256:572c3763a264ba47b3cf708a44ce965d98555f618ca42c926a9c1616d8f34269"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-musllinux_1_1_x86_64.whl", hash = "sha256:fd1abc0d89e30cc4e02e4064dc67fcc51bd941eb395c502aac3ec19fab46b519"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-win32.whl", hash = "sha256:3d47fa203a7bd9c5b6cee4736ee84ca03b8ef23193c0d1ca99b5089f72645c73"},
+    {file = "charset_normalizer-3.3.2-cp310-cp310-win_amd64.whl", hash = "sha256:10955842570876604d404661fbccbc9c7e684caf432c09c715ec38fbae45ae09"},
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+
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+[package.extras]
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/src/pyproject.toml	Wed Aug 14 22:08:14 2024 +0200
@@ -0,0 +1,38 @@
+[tool.poetry]
+name = "catedit"
+version = "0.2.7"
+description = "Collaboratice category editor"
+authors = ["Yves-Marie Haussonne <1218002+ymph@users.noreply.github.com>"]
+license = "CeCILL-B"
+readme = "README.md"
+
+[tool.poetry.dependencies]
+python = "^3.12"
+amqp = "*"
+celery = "*"
+environs = "*"
+Flask = "*"
+Flask-Caching = "*"
+Flask-Moment = "*"
+Flask-RESTful = "*"
+Flask-WTF = "*"
+GitHub-Flask = "*"
+Jinja2 = "*"
+kombu = "*"
+python-slugify = "*"
+pytz = "*"
+rdflib = "*"
+requests = "*"
+Unidecode = "*"
+Werkzeug = "*"
+WTForms = "*"
+uWSGI = "*"
+pylibmc = "*"
+
+[tool.poetry.group.dev.dependencies]
+pep8 = "*"
+pylint = "*"
+
+[build-system]
+requires = ["poetry-core"]
+build-backend = "poetry.core.masonry.api"